Crunching the data: New liver cancer subtypes revealed immunologically

Crunching the data: New liver cancer subtypes revealed immunologically
New subtype classification of HCC. Credit: Department of Molecular Oncology,TMDU

A research team based at Tokyo Medical and Dental University (TMDU) has used an integrated data analysis to classify hepatocellular carcinoma, the most common type of liver cancer, into three distinct subgroups, which should aid targeted treatment

Liver cancer remains a major problem in healthcare globally, being the second most common cause of cancer-related death globally. Previous studies showed that this disease, especially its predominant form (HCC), exhibits substantial heterogeneity. However, efforts to categorize HCC more precisely have been limited by an inability to integrate data from various sources into a single classification system.

A Tokyo Medical and Dental University (TMDU)-centered research group has made a major advance in this field by combining data on mutations, gene expression patterns, and immunological status to shed light on the variation among cases of HCC. The study, recently reported in the journal EBioMedicine, reveals that there are actually three distinct types of this disease, which should help in predicting the prognosis of individual patients and treating them more effectively (Fig 1).

The team first extracted a range of data on 183 removed HCC tumor specimens and then used to see if they clustered together into specific groups with distinct features. They then tested whether their findings were supported by an additional analysis of data from 373 HCC patients, and also incorporated data on each patient's characteristics such as their clinical course and overall outcome.

Crunching the data: New liver cancer subtypes revealed immunologically
Immunological characterization of HCC subtypes. Credit: Department of Molecular Oncology,TMDU
"We knew that we'd have to take a large number of different variables into account in order to establish clinically useful stratification of HCC," corresponding author Shinji Tanaka says. He adds, "our combination of genomic, epigenomic, and transcriptomic data and immune system characterization provided new insights into this disease."

Among the three types of HCC revealed by the observations, one included tumors with mutation in the CTNNB1 gene along with a suppressed immune system (Fig 2). Another featured tumors in those with metabolic disease, associated with conditions such as obesity, diabetes, and dyslipidemia, rather than having an association with hepatitis virus infection as typically found in other cases. Finally, in the third group, the tumors showed mitogenic features and chromosomal instability, and a worse patient prognosis (Fig 3).

"If we can use this new classification to group HCC patients according to their subtype, it should help us provide the specific treatment that's best for them," lead author Shu Shimada of TMDU says. "Our finding of a metabolic -related subtype is also particularly important given the rate at which diseases such as obesity and diabetes are becoming more and more prevalent."

The article "Comprehensive molecular and immunological characterization of hepatocellular carcinoma" is published in EBioMedicine at DOI: 10.1016/j.ebiom.2018.12.058.

Crunching the data: New liver cancer subtypes revealed immunologically
Summary of molecular and immunological subtypes of HCC. Credit: Department of Molecular Oncology,TMDU

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More information: Shu Shimada et al, Comprehensive molecular and immunological characterization of hepatocellular carcinoma, EBioMedicine (2018). DOI: 10.1016/j.ebiom.2018.12.058
Journal information: EBioMedicine

Provided by Tokyo Medical and Dental University
Citation: Crunching the data: New liver cancer subtypes revealed immunologically (2019, February 4) retrieved 24 June 2019 from https://medicalxpress.com/news/2019-02-crunching-liver-cancer-subtypes-revealed.html
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