New AI model accurately classifies colorectal polyps using slides from 24 institutions

New AI model accurately classifies colorectal polyps using slides from 24 institutions
Visualization of the classifications of the deep neural network model. The first column shows the original image, and the second column shows pathologist annotations of polyps. The third column depicts the model's detected heat map, where higher confidence predictions are shown in darker color. In the fourth column, the model's final output is shown, which highlights precancerous lesions that can potentially be used to aid pathologists in clinical practice. Credit: Saeed Hassanpour, Ph.D.

Colorectal cancer is estimated to cause more than 53,000 deaths in the US in 2020, making it the second most common cause of cancer death. This death rate, however, has been steadily dropping, likely due to better cancer screening programs such as colonoscopy. During colonoscopies, clinicians excise colorectal polyps and visually examine them on histopathology slides for neoplasia. Detecting cancer at an early, curable stage and removing pre-invasive adenomas or serrated lesions ultimately reduces the mortality rate. Numbers and types of polyps found can also indicate future risk for malignancies and are therefore used as the basis for screening recommendations.

An (AI) model for automated classification of could benefit screening programs by improving efficiency, reproducibility, and accuracy, as well as reducing access barriers to pathological services. In a new study out of Dartmouth's and Dartmouth-Hitchcock's Norris Cotton Cancer Center, a computer science and clinical research team led by Saeed Hassanpour, Ph.D., trained a to do just that. Not only can their model distinguish the four major types of colorectal polyps at the level of practicing pathologists, as evaluated on a dataset across multiple external institutions, but also proves that a model designed using data from a single institution can achieve on outside data.

The team found that a deep neural network, trained on colorectal polyp data from Dartmouth-Hitchcock Medical Center, still performed with the same level of sensitivity and accuracy as practicing pathologists when used on 238 slides spanning 24 different institutions in the US. These findings, "Evaluation of a Deep Neural Network for Automated Classification of Colorectal Polyps on Histopathology Slides," have been published in JAMA Network Open. "Our study is one of the first to show a deep neural network that is generalizable to data from multiple external medical centers," says Hassanpour. "A challenge in the field of deep learning for medical image analysis is collecting widespread data. Here, we have access to histopathology slides from 24 different institutions, which gave us the opportunity to evaluate and show that the AI models that we train are broadly generalizable to new data from outside."

The access to a multi-institutional dataset was made possible by Hassanpour's collaboration with Dr. Arief Suriawinata, MD, and his group from the Department of Pathology & Laboratory Medicine at Dartmouth-Hitchcock Medical Center and Dr. Elizabeth Barry, Ph.D., from the Department of Epidemiology at the Geisel School of Medicine at Dartmouth, as well as her colleagues from the Vitamin D/Calcium Polyp Prevention Clinical Trial.

Hassanpour's team has built a for showing the classifications of the neural network. They are currently working on a clinical trial to evaluate the use of their algorithm for assisting pathologists in diagnosis of colorectal polyps. "We are hoping to create a software application that can help pathologists improve their accuracy, efficiency, and consistency in diagnosing slides," he says.


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More information: JAMA Network Open (2020). DOI: 10.1001/jamanetworkopen.2020.3398
Journal information: JAMA Network Open

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