Scientists discover antibodies that target holes in HIV's defenses

September 12, 2016, The Scripps Research Institute
The Scripps Research Institute's Dennis Burton, Gabriel Ozorowski and Andrew Ward (left to right) are among the authors of the new paper. Credit: The Scripps Research Institute.

A new study from scientists at The Scripps Research Institute (TSRI) shows that "holes" in HIV's defensive sugar shield could be important in designing an HIV vaccine.

It appears that antibodies can target these holes, which are scattered in HIV's protective sugar or "glycan" shield, and the question is now whether these holes can be exploited to induce protective antibodies.

"It's important now to evaluate future vaccine candidates to more rapidly understand the immune response they induce to particular glycan holes and learn from it," said TSRI Professor Dennis R. Burton, who is also scientific director of the International AIDS Vaccine Initiative (IAVI) Neutralizing Antibody Center and of the National Institutes of Health's Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery (CHAVI-ID) at TSRI.

The study, published recently in the journal Cell Reports, was co-led by Burton, TSRI Associate Professor Andrew Ward, also of CHAVI-ID, and Rogier W. Sanders of the University of Amsterdam and Cornell University.

A Clue to Stopping HIV

Every virus has a signature structure, like the architecture of a building. By solving these structures, scientists can put together a blueprint showing where HIV is vulnerable to infection-blocking antibodies.

In the 1990s, scientists discovered that HIV can have random holes in its protective outer shell of glycan molecules. Until now, however, scientists weren't sure if antibodies could recognize and target these holes.

Researchers at Cornell and TSRI had previously designed a stabilized version of an important HIV protein, called the envelope glycoprotein (Env) trimer, to prompt rabbit models to produce antibodies against the virus. In the new study, the plan was to reveal HIV's vulnerabilities by examining where the antibodies bound the virus.

"From work on HIV-positive individuals, we knew that the best way to understand an antibody response is to isolate the individual antibodies and study them in detail," said Laura McCoy, a TSRI, IAVI and CHAVI-ID researcher now at University College London, who served as co-first author of the study with TSRI Senior Research Associate Gabriel Ozorowski, also of TSRI and CHAVI-ID, and Marit J. van Gils of the University of Amsterdam.

To their surprise, when the researchers examined the rabbits' antibodies, they found three rabbits had produced antibodies that targeted the same hole in Env. It appeared that antibodies could indeed target holes in the glycan shield.

"This opened up a whole new concept," said Ozorowski.

If the immune system was targeting this hole—preferring it to other vulnerable spots on Env—maybe holes would be especially important in designing vaccine candidates.

Toward Better Antibodies

By analyzing the genetic sequences of thousands of strains of HIV, the researchers found that 89 percent of strains appear to have a targetable hole in the Env. The virus has a defense mechanism though—it quickly mutates to fill in these gaps.

The researchers speculate that future vaccines might prompt the immune system to create antibodies to target holes. "Targeting a hole could help the immune system get its foot in the door," Ozorowski said. Alternatively, the holes may prove a distraction and should be filled in so the immune system can focus on targeting better sites for neutralizing the virus.

Burton said researchers must investigate the different possibilities, but he emphasized that this new understanding of glycan holes could help researchers narrow down the field of molecules needed in potential HIV vaccines.

Ward added that this same method of "rational" vaccine design—where researchers use a virus's precise molecular details to prompt the to produce specific —can also be applied to efforts to fight other viruses, such as influenza and Ebola viruses.

Explore further: Scientists find surprising trait in anti-HIV antibodies

More information: Laura E. McCoy et al, Holes in the Glycan Shield of the Native HIV Envelope Are a Target of Trimer-Elicited Neutralizing Antibodies, Cell Reports (2016). DOI: 10.1016/j.celrep.2016.07.074

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